PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0716.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 236aa    MW: 26582.3 Da    PI: 5.0351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0716.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-16102152255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd       k  r++lg+f+++ +Aaka++ a+ k++g
  Kaladp0095s0716.1.p 102 HYRGVRRRP-WGKFAAEIRD----RarKGSRVWLGTFDSEVDAAKAYDFAAFKMRG 152
                          8********.**********....33445**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.52E-29101160No hitNo description
Gene3DG3DSA:3.30.730.101.1E-29101161IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21102161IPR016177DNA-binding domain
PfamPF008476.6E-12102152IPR001471AP2/ERF domain
PROSITE profilePS5103223.38102160IPR001471AP2/ERF domain
SMARTSM003805.4E-35102166IPR001471AP2/ERF domain
PRINTSPR003674.2E-13103114IPR001471AP2/ERF domain
PRINTSPR003674.2E-13142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDETSTLDLI RSHLLADFSS TESFISSLHS DLLLDSTTGP YDAPFWSLFP VKPETDYSYN  60
LLEFIKPEFF DIAPAQREDT GKTSSSDSCR TETSSLPLDR KHYRGVRRRP WGKFAAEIRD  120
RARKGSRVWL GTFDSEVDAA KAYDFAAFKM RGSKAILNFP LQAGKEEGPP ENSSQRRRRR  180
RDSRAETTAT ESAAGSSSCY FNSNDEDNSY EPWTPSSQNL SFTTTMTMED QMLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-28101167470ATERF1
3gcc_A4e-28101167470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180QRRRRRR
2175183RRRRRRDSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022363.16e-49PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLI1TML24e-49I1TML2_9R
STRINGPOPTR_0003s15060.11e-46(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-27ERF family protein